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Commits on Oct 30, 2026
- Update README.rst
  johahi
  authored
  061b7a2
Commits on Aug 10, 2026
- Add funding section to README
  johahi
  authored
  dbfe6cd
Commits on Apr 1, 2026
- fix the order of arguments in val_dataset init in the evaluation notebook
  
  Aleksandr Neverov
  authored and
  johahi
  committed
  12692c3
Commits on Nov 1, 2025
- Update manuscript link in README
  johahi
  authored
  45b3e62
Commits on Aug 8, 2025
- Update data_loading_example.ipynb to use import_fragments
  lauradmartens
  authored
  8542ffe
Commits on Jul 30, 2025
- fixed the sequence window definition
  
  marie-minaeva
  authored and
  lauradmartens
  committed
  4c16d20
- enabled max_read_length in the dataloders
  
  marie-minaeva
  authored and
  lauradmartens
  committed
  5558138
- Added variable read length for other techologies
  
  marie-minaeva
  authored and
  lauradmartens
  committed
  dc5bd1e
Commits on Jul 16, 2025
- Update Evaluate_Model.ipynb
  lauradmartens
  authored
  00eb2e7
Commits on Jul 14, 2025
- Update train_rna_only.py
  lauradmartens
  authored
  6fe2a84
Commits on May 26, 2025
- Update README.rst
  lauradmartens
  authored
  a02f387
- Add rasterization
  
  lauradmartens
  authored and
  johahi
  committed
  81e5f89
- Add default neighbors
  
  lauradmartens
  authored and
  johahi
  committed
  2e0813d
- Remove unused dataloaders
  
  lauradmartens
  authored and
  johahi
  committed
  1e0fef8
Commits on Mar 17, 2025
- Add code to generate per sample
  lauradmartens
  committed
  c369752
Commits on Mar 13, 2025
- Update train_config.yaml
  lauradmartens
  authored
  6eb4553
Commits on Jan 10, 2025
- Update setup.py
  johahi
  authored
  37bdb2f
Commits on Dec 6, 2024
- Gene ID usage
  lauradmartens
  committed
  a4e5756
Commits on Dec 5, 2024
- pseudobulk count pred no longer OOMs for many cells
  johahi
  committed
  a2fd92b
Commits on Nov 30, 2024
- Update train_rna_only.py
  lauradmartens
  authored
  9d9f1c1
- Merge pull request #7 from gagneurlab/evaluate-function
  lauradmartens
  authored
  90e7e3f
- Implement logging for rna only
  lauradmartens
  committed
  be89ec2
Commits on Nov 25, 2024
- Adapt eval function
  lauradmartens
  committed
  2cdf01f
- Update gitignore
  lauradmartens
  committed
  8b3a3fb
Commits on Nov 21, 2024
- Add data saving
  lauradmartens
  committed
  5b1c7d3
- Update scripts
  lauradmartens
  committed
  ca0a499
- Update utils.py
  lauradmartens
  authored
  7b8816a
- Add embedding to example
  lauradmartens
  committed
  5ebb154
- Fix heading
  lauradmartens
  committed
  5e3f8a3
Commits on Nov 18, 2024
- Fix merge conflicts
  lauradmartens
  committed
  19dbad5
- Update to new snapatac
  lauradmartens
  committed
  45633eb
- Update readme_link.rst
  lauradmartens
  authored
  88ef682
- Update installation.rst
  lauradmartens
  authored
  43ab402
- Update README.rst
  lauradmartens
  authored
  f3c23d6
- Update README.rst
  lauradmartens
  authored
  2668e30

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