8000 trouble with install {arrow} · Issue #7 · r-hub/r-minimal · GitHub
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trouble with install {arrow} #7

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trouble with install {arrow}#7

Description

@xiaodaigh
xiaodaigh
opened on Dec 29, 2019

I have some trouble installing {arrow} which in turn is caused by {rlang}

here my the the Dockerfile

FROM rhub/r-minimal
RUN installr -d -t libparquet-dev arrow

/bin/sh: gcc: not found
make: *** [/usr/local/lib/R/etc/Makeconf:168: capture.o] Error 127
ERROR: compilation f
8000
ailed for package ‘rlang’

Activity

  1. gaborcsardi commented on Dec 29, 2019

    @gaborcsardi
    gaborcsardi
    on Dec 29, 2019
    Collaborator

    This is what I get:

    ~ # installr -d -t libparquet-dev arrow

--------------------------------------
Temporarily adding libparquet-dev gcc musl-dev g++
fetch http://dl-cdn.alpinelinux.org/alpine/v3.10/main/x86_64/APKINDEX.tar.gz
fetch http://dl-cdn.alpinelinux.org/alpine/v3.10/community/x86_64/APKINDEX.tar.gz
ERROR: unsatisfiable constraints:
  libparquet-dev (missing):
    required by: world[libparquet-dev]

--------------------------------------
Removing libparquet-dev gcc musl-dev g++

--------------------------------------
Cleaning up cache
~ #

  2. gaborcsardi commented on Dec 29, 2019

    @gaborcsardi
    gaborcsardi
    on Dec 29, 2019
    Collaborator
    ~ # apk search parquet
~ #

    so apparently, there is no parquet in the base Alpine system.

  3. gaborcsardi commented on Dec 29, 2019

    @gaborcsardi
    gaborcsardi
    on Dec 29, 2019
    Collaborator

    Seems like you'll need to build arrow, which is not quite ideal: https://gist.github.com/bskaggs/fc3c8d0d553be54e2645616236fdc8c6

  4. xiaodaigh commented on Dec 30, 2019

    @xiaodaigh
    xiaodaigh
    on Dec 30, 2019
    Author

    It doesn't work as jemalloc is not longer available

  5. xiaodaigh
    closed this as completedon Dec 30, 2019
  6. xiaodaigh
    reopened this on Dec 30, 2019

  7. xiaodaigh commented on Dec 30, 2019

    @xiaodaigh
    xiaodaigh
    on Dec 30, 2019
    Author

    Seems like you'll need to build arrow, which is not quite ideal: https://gist.github.com/bskaggs/fc3c8d0d553be54e2645616236fdc8c6

    Those are instructions for Python. I will see if it works for R as well.

  8. xiaodaigh
    changed the title [-]arrow trouble with install arrow[/-] [+]trouble with install {arrow}[/+] on Dec 31, 2019

  9. gaborcsardi commented on Dec 31, 2019

    @gaborcsardi
    gaborcsardi
    on Dec 31, 2019
    Collaborator

    Those are instructions for Python. I will see if it works for R as well.

    I meant the part that builds the arrow library:

    https://gist.github.com/bskaggs/fc3c8d0d553be54e2645616236fdc8c6#file-dockerfile-L25-L42

  10. gaborcsardi commented on Jan 2, 2020

    @gaborcsardi
    gaborcsardi
    on Jan 2, 2020
    Collaborator

    I added a note to the README about this. Please comment here if you have any news about compiling arrow on ALpine.

  11. gaborcsardi
    closed this as completedon Jan 2, 2020
  12. gaborcsardi
    added a commit that references this issue on Dec 12, 2023

    Add example for arrow

    1ef8ed2

  13. gaborcsardi commented on Dec 12, 2023

    @gaborcsardi
    gaborcsardi
    on Dec 12, 2023
    Collaborator

    quite late, but arrow works now, see the example in examples/arrow.

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