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Commits on Jun 12, 2023
- Merge pull request #44 from Npaffen/master - closes #43
  yannickwurm
  authored
  1ee420d
Commits on Jun 7, 2023
- Update install.sh
  Npaffen
  authored
  496da35
Commits on May 29, 2021
- Outdent list of citations
  yeban
  committed
  15162d0
- Add new citations; switch to numbered list
  yeban
  committed
  fff39c2
- Merge remote-tracking branch 'cmatKhan/master'
  yeban
  committed
  aab57e5
- add shebang to scripts/install.sh
  cmatKhan
  committed
  71cfaee
Commits on Dec 30, 2020
- Add one more citation; use title case for citations
  yeban
  committed
  32e5be0
Commits on Dec 3, 2020
- Add new citations of flo to README
  yeban
  committed
  9e51857
Commits on Nov 23, 2020
- Add CITATION.cff
  yeban
  committed
  f05a5e9
Commits on Nov 16, 2020
- Better explain unmapped.txt output file in README
  yeban
  committed
  11e4d15
- Print helpful message instead of stacktrace if cleaning lifted gff fails
  yeban
  committed
  85107b6
- Ask to install BioRuby on stderr
  yeban
  committed
  4b1db9e
Commits on Nov 11, 2020
- gff_recover.rb should exit if bioruby is not installed!
  yeban
  committed
  040c6da
Commits on Aug 20, 2019
- Add 3 new mentions of flo
  yeban
  committed
  41f5ae4
- Ask to cite MolEcol paper and fix a typo
  yeban
  committed
  6f0bb9f
Commits on Oct 10, 2018
- Add a subset of augustus 3.3 output for testing gff_remove_feats.rb
  yeban
  committed
  2953e63
Commits on Sep 30, 2018
- Revise gff feature removal script
  yeban
  committed
  d3ef04e
Commits on Jul 22, 2018
- Fix install script
  yeban
  committed
  a2fee4b
Commits on Jul 14, 2018
- Expand paths before adding to path
  yeban
  committed
  352811c
- Expand path to source and target fa
  yeban
  committed
  0c2b2b8
Commits on Jun 25, 2018
- colons
  yeban
  committed
  206f9c6
- Reverse chronological order for citations (year only)
  yeban
  committed
  031a804
- Update citations
  yeban
  committed
  f5e974b
- Check Linux or Mac for downloading UCSC tools
  yeban
  committed
  0503d99
- Expand README
  yeban
  committed
  be3f6b0
- Highlight name of generated chain file in README
  yeban
  committed
  c9ce21e
- Alternatively, the input file may not be in GFF3 format
  yeban
  committed
  9b47634
- Print help if liftOver's output is empty and exit
  yeban
  committed
  777ad4f
- Add script to get longest transcript per gene from a GFF file
  yeban
  committed
  1171b8d
- gff_remove_feats.rb: Print help unless both params specified
  yeban
  committed
  3f3ce61
Commits on Apr 25, 2018
- max threads = num scaffolds in target
  yannickwurm
  authored
  74d9f37
Commits on Oct 29, 2017
- gff_compare.rb: sort before extractfeat
  yeban
  committed
  8b7372d
Commits on Oct 17, 2017
- Use basename of input gff for creating output dir
  yeban
  committed
  82d53bf
Commits on Jul 14, 2017
- Suggest lowering minIdentity for inter-species liftover.
  yeban
  committed
  cb6ee9c
- Fix invocation of gff_compare.rb.
  yeban
  committed
  b675b4a

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Commits on Jun 12, 2023

Commits on Jun 7, 2023

Commits on May 29, 2021

Commits on Dec 30, 2020

Commits on Dec 3, 2020

Commits on Nov 23, 2020

Commits on Nov 16, 2020

Commits on Nov 11, 2020

Commits on Aug 20, 2019

Commits on Oct 10, 2018

Commits on Sep 30, 2018

Commits on Jul 22, 2018

Commits on Jul 14, 2018

Commits on Jun 25, 2018

Commits on Apr 25, 2018

Commits on Oct 29, 2017

Commits on Oct 17, 2017

Commits on Jul 14, 2017