Data & Engineering Scientist in Biomedical Research
I work on computational proteomics, bioinformatics pipelines, and open-source tools for mass spectrometry data analysis.
- Proteomics & Mass Spectrometry - Building workflows for quantitative proteomics (DDA, DIA, TMT)
- Data Standards - Developing metadata standards and data formats for proteomics
- Bioinformatics Tools - Creating pipelines with Nextflow, Docker, and cloud platforms
- Open Science - Contributing to community-driven projects and FAIR data principles
- quantms - Nextflow workflow for quantitative mass spectrometry
- proteomics-sample-metadata - SDRF standard for proteomics metadata
- sdrf-pipelines - Validator and converter for SDRF files
- pmultiqc - Quality control reporting for proteomics
- ibaqpy - Absolute quantification for proteomics data